Science Done on a Machine by a Machine: AI Agents in Computational Chemistry

arXiv:2608.18508v2 Announce Type: replace-cross Abstract: We are witnessing an explosion of agentic systems for computational chemistry: from four in 2024 to seventeen in 2025 and over sixty now, surveyed here. What is delegated to these systems is shifting from single calculations to whole in silico experiments and even manuscript writing. The ultimate destination is a fully autonomous AI scientist, where the entirety of computational chemistry is performed on a machine by a machine, without human supervision. Our survey shows that these systems are turning into vetted chemistry skills on general-purpose coding agents, and that they must be evaluated not only on their final answers but also on whether their calculations actually support these answers. The role of the human computational chemist is shifting from performing calculations to directing and supervising them, and the field should invest in the judgement that makes the supervision reliable: we propose a reporting standard, an evaluation reproducing published studies, a controlled comparison with general-purpose coding agents, and how to teach.